HUSAR Bioinformatics Lab
Deutsches Krebsforschungszentrum Genomics Proteomics Core Facility
Quick Start
HUSAR (DKFZ)
HUSAR (GENIUS)
SRS
Registration
Test Account
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User Support
HUSAR Tools and Databases
 
Tools provided by the HUSAR Biofinformatics Lab in a collaboration of the Department of Molecular Biophysics at DKFZ and the Steinbeis Transfer Center for Genome Informatics:
  • more than 200 locally installed databases available in HUSAR and/or SRS:

  • HUSAR (Sequence Analysis Software Package)
  • GENSCAN (Gene Prediction)
  • PHYLIP (Phylogenetic Analysis Programs)
  • EST Cluster
  • Program Packages for Genetic Linkage Analysis
  • The Bioccelerator (quick database searches)
Some of the programs are free, others require registration. Registration for an account is a simple process. A free test account allows you to have access for 4 weeks. Please visit the About us page to get more information about the HUSAR Bioinformatics Lab and our products.

 
The HUSAR Bioinformatics Lab offers for the following tools via WWW Interfaces:
 
W2H Logo HUSAR
For DKFZ users
For external users
Registration required!
The large collection of sequence analysis tools

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SRS SRS Sequence Retrieval System Browsing/searching 100s of databases using keywords

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SRS Tissue Distribution Database Tissue Distribution Database The TissueDistribution database is a repository for identifying and ranking the genes in the spectrum of tissue specificity

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TRANSFAC TRANSFAC Professional TRANSFAC Professional TRANSFAC - The transcription factor database.

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GENSCAN Gene Prediction Promoter, exons and poly-A signal prediction

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ESTCluster
For DKFZ users
For external users
Registration required!
EST cluster tool

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Bioccelerator Fast database searches Special machine for fast Smith-Waterman database searches

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GeneCards A Database of Human Genes (from Weizmann Institute) Information about human genes

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Protein Prospector Sequence Mining in conjunction with Mass Proteometry Experiments
 (DKFZ users only)
Database searches with mass spec data or peptide sequencing data
 
 
For the following packages, please use telnet or SSH:
  • STADEN (Sequence assembly and analysis program package)
  • PHYLIP (Phylogenetic Analysis Programs)
  • Program Packages for Genetic Linkage Analysis
    • LINKAGE Package (Linkage Analysis and Genetic Risk Calculation)
    • Mapmaker (Construction of Co-dominant Multipoint Maps)
    • Cri-Map (Construction of Large Multilocus Linkage Maps)
    • Map (Multipoint Map Construction from Two-point Lod-scores)
    • Fastmap (Approximate Multipoint Lodscore)
    • LIPED (Two-point Linkage Analysis)
    • Pedpack (General Pedigree Analysis and Display)
    • Simlink (Linkage Simulation Program)
    • LDB (Location Database)
    • SIGMA (System for Integrated Genome Map Assembly)
If you have further questions, please contact us.